org.jmol.atomdata
Class AtomData

java.lang.Object
  org.jmol.atomdata.AtomData

public class AtomData
extends Object

Field Summary

int	adpMode
int	atomCount
int[]	atomicNumber
int[]	atomIndex
int[]	atomMolecule
float[]	atomRadius
Point3f[]	atomXyz
BitSet	bsIgnored
BitSet[]	bsMolecules
BitSet	bsSelected
String	fileName
int	firstAtomIndex
int	firstModelIndex
float	hAtomRadius
Point3f[][]	hAtoms
int	hydrogenAtomCount
int	lastModelIndex
static int	MODE_FILL_COORDS
static int	MODE_FILL_MOLECULES
static int	MODE_FILL_MULTIMODEL
static int	MODE_FILL_RADII
static int	MODE_GET_ATTACHED_HYDROGENS
int	modelIndex
String	modelName
String	programInfo
RadiusData	radiusData

Constructor Summary

AtomData()

Method Summary

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

MODE_FILL_COORDS

public static final int MODE_FILL_COORDS

See Also:

Constant Field Values

MODE_FILL_RADII

public static final int MODE_FILL_RADII

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Constant Field Values

MODE_FILL_MOLECULES

public static final int MODE_FILL_MOLECULES

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Constant Field Values

MODE_GET_ATTACHED_HYDROGENS

public static final int MODE_GET_ATTACHED_HYDROGENS

See Also:

Constant Field Values

MODE_FILL_MULTIMODEL

public static final int MODE_FILL_MULTIMODEL

See Also:

Constant Field Values

programInfo

public String programInfo

fileName

public String fileName

modelName

public String modelName

modelIndex

public int modelIndex

bsSelected

public BitSet bsSelected

bsIgnored

public BitSet bsIgnored

bsMolecules

public BitSet[] bsMolecules

radiusData

public RadiusData radiusData

firstAtomIndex

public int firstAtomIndex

firstModelIndex

public int firstModelIndex

lastModelIndex

public int lastModelIndex

hAtomRadius

public float hAtomRadius

atomIndex

public int[] atomIndex

atomXyz

public Point3f[] atomXyz

atomRadius

public float[] atomRadius

atomicNumber

public int[] atomicNumber

atomMolecule

public int[] atomMolecule

hAtoms

public Point3f[][] hAtoms

atomCount

public int atomCount

hydrogenAtomCount

public int hydrogenAtomCount

adpMode

public int adpMode

Constructor Detail

AtomData

public AtomData()