org.jmol.constant
Enum EnumStructure

java.lang.Object
  java.lang.Enum<EnumStructure>
      org.jmol.constant.EnumStructure

All Implemented Interfaces:

Serializable, Comparable<EnumStructure>

public enum EnumStructure
extends Enum<EnumStructure>

Enum Constant Summary

CARBOHYDRATE

DNA

HELIX

HELIX_310

HELIX_ALPHA

HELIX_PI

NONE

NOT

RNA

SHEET

TURN

Field Summary

private int	color
private int	id
private String	name

Method Summary

String	getBioStructureTypeName(boolean isGeneric)
int	getColor()
int	getId()
String	getName()
static EnumStructure	getProteinStructureType(String name) In DRuMS, RasMol, and Chime, quoting from http://www.umass.edu/microbio/rasmol/rascolor.htm The RasMol structure color scheme colors the molecule by protein secondary structure.
private boolean	isProtein()
static EnumStructure	valueOf(String name) Returns the enum constant of this type with the specified name.
static EnumStructure[]	values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

NOT

public static final EnumStructure NOT

NONE

public static final EnumStructure NONE

TURN

public static final EnumStructure TURN

SHEET

public static final EnumStructure SHEET

HELIX

public static final EnumStructure HELIX

DNA

public static final EnumStructure DNA

RNA

public static final EnumStructure RNA

CARBOHYDRATE

public static final EnumStructure CARBOHYDRATE

HELIX_310

public static final EnumStructure HELIX_310

HELIX_ALPHA

public static final EnumStructure HELIX_ALPHA

HELIX_PI

public static final EnumStructure HELIX_PI

Field Detail

id

private int id

name

private String name

color

private int color

Method Detail

values

public static EnumStructure[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (EnumStructure c : EnumStructure.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static EnumStructure valueOf(String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum type has no constant with the specified name

NullPointerException - if the argument is null

getId

public int getId()

getName

public String getName()

getColor

public int getColor()

getProteinStructureType

public static final EnumStructure getProteinStructureType(String name)

In DRuMS, RasMol, and Chime, quoting from http://www.umass.edu/microbio/rasmol/rascolor.htm The RasMol structure color scheme colors the molecule by protein secondary structure. Structure Decimal RGB Hex RGB Alpha helices red-magenta [255,0,128] FF 00 80 * Beta strands yellow [255,200,0] FF C8 00 * Turns pale blue [96,128,255] 60 80 FF Other white [255,255,255] FF FF FF Values given in the 1994 RasMol 2.5 Quick Reference Card ([240,0,128] and [255,255,0]) are not correct for RasMol 2.6-beta-2a. This correction was made above on Dec 5, 1998.

Parameters:

name -

Returns:

0-3 or 7-9, but not dna, rna, carbohydrate

getBioStructureTypeName

public String getBioStructureTypeName(boolean isGeneric)

isProtein

private boolean isProtein()