org.jmol.export
Class _IdtfExporter

java.lang.Object
  org.jmol.export.___Exporter
      org.jmol.export.__CartesianExporter
          org.jmol.export._IdtfExporter

public class _IdtfExporter
extends __CartesianExporter

Field Summary

private Matrix4f	cylinderMatrix
private boolean	haveCircle
private boolean	haveCone
private boolean	haveCylinder
private boolean	haveCylinderIn
private boolean	haveSphere
private Map<String,Boolean>	htDefs
private Map<String,List<String>>	htNodes
private int	iObj
private Matrix4f	m
private StringBuffer	models
private StringBuffer	modifiers
private Point3f	ptMax
private Point3f	ptMin
private StringBuffer	resources
private StringBuffer	sbTemp
private int[][]	triangleFace

Fields inherited from class org.jmol.export.__CartesianExporter

sphereMatrix, viewpoint

Fields inherited from class org.jmol.export.___Exporter

aperatureAngle, backgroundColix, bw, cameraDistance, cameraPosition, center, commandLineOptions, commentChar, degreesPerRadian, depthZ, exportType, fileName, fixedRotationCenter, g3d, isToFile, jmolRenderer, lightSource, lineWidthMad, nBytes, output, privateKey, referenceCenter, scalePixelsPerAngstrom, screenHeight, screenWidth, slabZ, tempA, tempP1, tempP2, tempP3, tempV1, tempV2, tempV3, viewer

Constructor Summary

_IdtfExporter()

Method Summary

private void	addColix(short colix, boolean haveColors)
private void	addMeshData(String key, int nFaces, int nCoord, int nNormals, int nColors, StringBuffer sbFaceCoordIndices, StringBuffer sbFaceNormalIndices, StringBuffer sbColorIndices, StringBuffer sbCoords, StringBuffer sbNormals, StringBuffer sbColors)
private void	addShader(String key, short colix)
private void	checkPoint(Tuple3f pt)
(package private) String	finalizeOutput()
private String	getAuxiliaryFileData()
private String	getCircleResource()
private String	getConeResource()
private String	getCylinderResource(boolean inSide)
private String	getMeshData(String type, int[][] indices, Tuple3f[] vertexes, Tuple3f[] normals)
private void	getMeshHeader(String type, int nFaces, int vertexCount, int normalCount, int colorCount, StringBuffer sb)
private String	getParentItem(String name, Matrix4f m)
private String	getSphereResource()
private String	getTriangleResource(String key, Point3f pt1, Point3f pt2, Point3f pt3)
protected void	output(Tuple3f pt)
private void	output(Tuple3f pt, StringBuffer sb, boolean checkpt)
protected void	outputCircle(Point3f pt1, Point3f pt2, float radius, short colix, boolean doFill)
private void	outputCircle(Point3f ptCenter, Point3f ptPerp, short colix, float radius)
protected void	outputCone(Point3f ptBase, Point3f ptTip, float radius, short colix)
protected boolean	outputCylinder(Point3f ptCenter, Point3f pt1, Point3f pt2, short colix, byte endcaps, float radius, Point3f ptX, Point3f ptY, boolean checkRadius)
private boolean	outputEllipse(Point3f ptCenter, Point3f ptZ, Point3f ptX, Point3f ptY, short colix)
private void	outputEllipsoid(Point3f center, Matrix4f sphereMatrix, short colix)
protected void	outputEllipsoid(Point3f center, Point3f[] points, short colix)
protected void	outputFace(int[] face, int[] map, int faceVertexMax)
protected void	outputFooter()
protected void	outputHeader()
private void	outputNodes()
protected void	outputSphere(Point3f center, float radius, short colix, boolean checkRadius)
protected void	outputSurface(Point3f[] vertices, Vector3f[] normals, short[] colixes, int[][] indices, short[] polygonColixes, int nVertices, int nPolygons, int nFaces, BitSet bsPolygons, int faceVertexMax, short colix, List<Short> colorList, Map<Short,Integer> htColixes, Point3f offset)
protected void	outputTextPixel(Point3f pt, int argb)
protected void	outputTriangle(Point3f pt1, Point3f pt2, Point3f pt3, short colix)

Methods inherited from class org.jmol.export.__CartesianExporter

drawAtom, drawCircle, drawCylinder, drawEllipse, drawPixel, drawTextPixel, fillConeScreen, fillCylinderScreen, fillCylinderScreenMad, fillEllipsoid, fillSphere, fillTriangle, getCameraPosition, getCoordinateMap, getModelCenter, getNormalMap, outputIndices, plotImage, plotText, setSphereMatrix

Methods inherited from class org.jmol.export.___Exporter

drawFilledCircle, drawSurface, getColorList, getConeMesh, getExportDate, getJmolPerspective, getRotationMatrix, getRotationMatrix, initializeOutput, opacityFractionalFromArgb, opacityFractionalFromColix, output, outputComment, outputJmolPerspective, outputVertex, outputVertices, rgbFractionalFromArgb, rgbFractionalFromColix, round, round, setRenderer, setTempVertex, translucencyFractionalFromColix

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

haveSphere

private boolean haveSphere

haveCylinder

private boolean haveCylinder

haveCylinderIn

private boolean haveCylinderIn

haveCone

private boolean haveCone

haveCircle

private boolean haveCircle

ptMin

private Point3f ptMin

ptMax

private Point3f ptMax

iObj

private int iObj

htDefs

private Map<String,Boolean> htDefs

m

private final Matrix4f m

models

private final StringBuffer models

resources

private final StringBuffer resources

modifiers

private final StringBuffer modifiers

htNodes

private Map<String,List<String>> htNodes

cylinderMatrix

private Matrix4f cylinderMatrix

sbTemp

private StringBuffer sbTemp

triangleFace

private int[][] triangleFace

Constructor Detail

_IdtfExporter

public _IdtfExporter()

Method Detail

output

protected void output(Tuple3f pt)

Specified by:

output in class ___Exporter

output

private void output(Tuple3f pt,
                    StringBuffer sb,
                    boolean checkpt)

checkPoint

private void checkPoint(Tuple3f pt)

outputHeader

protected void outputHeader()

Specified by:

outputHeader in class ___Exporter

finalizeOutput

String finalizeOutput()

Overrides:

finalizeOutput in class ___Exporter

getAuxiliaryFileData

private String getAuxiliaryFileData()

getParentItem

private String getParentItem(String name,
                             Matrix4f m)

addColix

private void addColix(short colix,
                      boolean haveColors)

addShader

private void addShader(String key,
                       short colix)

outputFooter

protected void outputFooter()

Overrides:

outputFooter in class ___Exporter

outputNodes

private void outputNodes()

outputEllipsoid

protected void outputEllipsoid(Point3f center,
                               Point3f[] points,
                               short colix)

Specified by:

outputEllipsoid in class __CartesianExporter

outputEllipsoid

private void outputEllipsoid(Point3f center,
                             Matrix4f sphereMatrix,
                             short colix)

getSphereResource

private String getSphereResource()

getMeshData

private String getMeshData(String type,
                           int[][] indices,
                           Tuple3f[] vertexes,
                           Tuple3f[] normals)

getMeshHeader

private void getMeshHeader(String type,
                           int nFaces,
                           int vertexCount,
                           int normalCount,
                           int colorCount,
                           StringBuffer sb)

outputCylinder

protected boolean outputCylinder(Point3f ptCenter,
                                 Point3f pt1,
                                 Point3f pt2,
                                 short colix,
                                 byte endcaps,
                                 float radius,
                                 Point3f ptX,
                                 Point3f ptY,
                                 boolean checkRadius)

Specified by:

outputCylinder in class __CartesianExporter

outputCircle

protected void outputCircle(Point3f pt1,
                            Point3f pt2,
                            float radius,
                            short colix,
                            boolean doFill)

Specified by:

outputCircle in class __CartesianExporter

outputEllipse

private boolean outputEllipse(Point3f ptCenter,
                              Point3f ptZ,
                              Point3f ptX,
                              Point3f ptY,
                              short colix)

outputCircle

private void outputCircle(Point3f ptCenter,
                          Point3f ptPerp,
                          short colix,
                          float radius)

getCylinderResource

private String getCylinderResource(boolean inSide)

outputFace

protected void outputFace(int[] face,
                          int[] map,
                          int faceVertexMax)

Specified by:

outputFace in class __CartesianExporter

outputSurface

protected void outputSurface(Point3f[] vertices,
                             Vector3f[] normals,
                             short[] colixes,
                             int[][] indices,
                             short[] polygonColixes,
                             int nVertices,
                             int nPolygons,
                             int nFaces,
                             BitSet bsPolygons,
                             int faceVertexMax,
                             short colix,
                             List<Short> colorList,
                             Map<Short,Integer> htColixes,
                             Point3f offset)

Overrides:

outputSurface in class ___Exporter

Parameters:

vertices - generally unique vertices [0:nVertices)

normals - one per vertex

colixes - one per vertex, or null

indices - one per triangular or quad polygon; may have additional elements beyond vertex indices if faceVertexMax = 3 triangular if faceVertexMax == 3; 3 or 4 if face VertexMax = 4

polygonColixes - face-based colixes

nVertices - vertices[nVertices-1] is last vertex

nPolygons - indices[nPolygons - 1] is last polygon

nFaces - number of triangular faces required

bsPolygons - number of polygons (triangles or quads)

faceVertexMax - (3) triangles only, indices[][i] may have more elements (4) triangles and quads; indices[][i].length determines

colix - overall (solid) color index

colorList - list of unique color IDs

htColixes - map of color IDs to colorList

addMeshData

private void addMeshData(String key,
                         int nFaces,
                         int nCoord,
                         int nNormals,
                         int nColors,
                         StringBuffer sbFaceCoordIndices,
                         StringBuffer sbFaceNormalIndices,
                         StringBuffer sbColorIndices,
                         StringBuffer sbCoords,
                         StringBuffer sbNormals,
                         StringBuffer sbColors)

outputCone

protected void outputCone(Point3f ptBase,
                          Point3f ptTip,
                          float radius,
                          short colix)

Specified by:

outputCone in class __CartesianExporter

getConeResource

private String getConeResource()

getCircleResource

private String getCircleResource()

outputSphere

protected void outputSphere(Point3f center,
                            float radius,
                            short colix,
                            boolean checkRadius)

Specified by:

outputSphere in class __CartesianExporter

outputTextPixel

protected void outputTextPixel(Point3f pt,
                               int argb)

Specified by:

outputTextPixel in class __CartesianExporter

outputTriangle

protected void outputTriangle(Point3f pt1,
                              Point3f pt2,
                              Point3f pt3,
                              short colix)

Specified by:

outputTriangle in class __CartesianExporter

getTriangleResource

private String getTriangleResource(String key,
                                   Point3f pt1,
                                   Point3f pt2,
                                   Point3f pt3)