org.jmol.jvxl.data
Class JvxlData

java.lang.Object
  org.jmol.jvxl.data.JvxlData

public class JvxlData
extends Object

Field Summary

boolean	allowVolumeRender
Point3f[]	boundingBox
String	color
boolean	colorDensity
int	colorFractionBase
int	colorFractionRange
String	colorScheme
short[]	contourColixes
String	contourColors
float[]	contourValues
float[]	contourValuesUsed
float	cutoff
float	dataMax
float	dataMin
boolean	dataXYReversed
int	diameter
int	edgeFractionBase
int	edgeFractionRange
int	excludedTriangleCount
int	excludedVertexCount
boolean	insideOut
boolean	isBicolorMap
boolean	isColorReversed
boolean	isContoured
boolean	isCutoffAbsolute
boolean	isJvxlPrecisionColor
boolean	isSlabbable
boolean	isTruncated
boolean	isXLowToHigh
String	jvxlColorData
boolean	jvxlDataIs2dContour
boolean	jvxlDataIsColorDensity
boolean	jvxlDataIsColorMapped
String	jvxlEdgeData
BitSet[]	jvxlExcluded
String	jvxlFileMessage
String	jvxlFileTitle
Point4f	jvxlPlane
String	jvxlSurfaceData
String	jvxlVolumeDataXml
float	mappedDataMax
float	mappedDataMin
short	maxColorIndex
String	meshColor
short	minColorIndex
String	moleculeXml
long	nBytes
int	nContours
int	nEdges
int	nPointsX
int	nPointsY
int	nPointsZ
int	nSurfaceInts
int	nVertexColors
float	pointsPerAngstrom
String	rendering
int	saveVertexCount
float	scale3d
String	slabInfo
int	slabValue
String[]	title
float	translucency
float	valueMappedToBlue
float	valueMappedToRed
List<Object>[]	vContours
String	version
Map<String,BitSet>	vertexColorMap
int	vertexCount
boolean	vertexDataOnly
float	voxelVolume
boolean	wasCubic
boolean	wasJvxl

Constructor Summary

JvxlData()

Method Summary

void	clear()
void	jvxlUpdateInfo(String[] title, long nBytes)
void	setSurfaceInfo(Point4f thePlane, int nSurfaceInts, String surfaceData)
void	setSurfaceInfoFromBitSet(BitSet bs, Point4f thePlane)
static String	updateSurfaceData(String edgeData, float[] vertexValues, int vertexCount, int vertexIncrement, char isNaN)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

wasJvxl

public boolean wasJvxl

wasCubic

public boolean wasCubic

jvxlFileTitle

public String jvxlFileTitle

jvxlFileMessage

public String jvxlFileMessage

jvxlSurfaceData

public String jvxlSurfaceData

jvxlEdgeData

public String jvxlEdgeData

jvxlColorData

public String jvxlColorData

jvxlVolumeDataXml

public String jvxlVolumeDataXml

jvxlExcluded

public BitSet[] jvxlExcluded

jvxlPlane

public Point4f jvxlPlane

isJvxlPrecisionColor

public boolean isJvxlPrecisionColor

jvxlDataIsColorMapped

public boolean jvxlDataIsColorMapped

jvxlDataIs2dContour

public boolean jvxlDataIs2dContour

jvxlDataIsColorDensity

public boolean jvxlDataIsColorDensity

isColorReversed

public boolean isColorReversed

edgeFractionBase

public int edgeFractionBase

edgeFractionRange

public int edgeFractionRange

colorFractionBase

public int colorFractionBase

colorFractionRange

public int colorFractionRange

dataXYReversed

public boolean dataXYReversed

insideOut

public boolean insideOut

isXLowToHigh

public boolean isXLowToHigh

isContoured

public boolean isContoured

isBicolorMap

public boolean isBicolorMap

isTruncated

public boolean isTruncated

isCutoffAbsolute

public boolean isCutoffAbsolute

vertexDataOnly

public boolean vertexDataOnly

mappedDataMin

public float mappedDataMin

mappedDataMax

public float mappedDataMax

valueMappedToRed

public float valueMappedToRed

valueMappedToBlue

public float valueMappedToBlue

cutoff

public float cutoff

pointsPerAngstrom

public float pointsPerAngstrom

nPointsX

public int nPointsX

nPointsY

public int nPointsY

nPointsZ

public int nPointsZ

nBytes

public long nBytes

nContours

public int nContours

nEdges

public int nEdges

nSurfaceInts

public int nSurfaceInts

vertexCount

public int vertexCount

vContours

public List<Object>[] vContours

contourColixes

public short[] contourColixes

contourColors

public String contourColors

contourValues

public float[] contourValues

contourValuesUsed

public float[] contourValuesUsed

scale3d

public float scale3d

minColorIndex

public short minColorIndex

maxColorIndex

public short maxColorIndex

title

public String[] title

version

public String version

boundingBox

public Point3f[] boundingBox

excludedTriangleCount

public int excludedTriangleCount

excludedVertexCount

public int excludedVertexCount

colorDensity

public boolean colorDensity

moleculeXml

public String moleculeXml

dataMin

public float dataMin

dataMax

public float dataMax

saveVertexCount

public int saveVertexCount

vertexColorMap

public Map<String,BitSet> vertexColorMap

nVertexColors

public int nVertexColors

color

public String color

meshColor

public String meshColor

translucency

public float translucency

colorScheme

public String colorScheme

rendering

public String rendering

slabValue

public int slabValue

isSlabbable

public boolean isSlabbable

diameter

public int diameter

slabInfo

public String slabInfo

allowVolumeRender

public boolean allowVolumeRender

voxelVolume

public float voxelVolume

Constructor Detail

JvxlData

public JvxlData()

Method Detail

clear

public void clear()

setSurfaceInfo

public void setSurfaceInfo(Point4f thePlane,
                           int nSurfaceInts,
                           String surfaceData)

setSurfaceInfoFromBitSet

public void setSurfaceInfoFromBitSet(BitSet bs,
                                     Point4f thePlane)

jvxlUpdateInfo

public void jvxlUpdateInfo(String[] title,
                           long nBytes)

updateSurfaceData

public static String updateSurfaceData(String edgeData,
                                       float[] vertexValues,
                                       int vertexCount,
                                       int vertexIncrement,
                                       char isNaN)