org.jmol.modelsetbio
Class AminoPolymer.Bridge

java.lang.Object
  org.jmol.modelsetbio.AminoPolymer.Bridge

Enclosing class:

AminoPolymer

private class AminoPolymer.Bridge
extends Object

Field Summary

protected Atom	a
protected Atom	b
protected boolean	isAntiparallel
protected int[][]	ladder

Constructor Summary

protected

AminoPolymer.Bridge(Atom a, Atom b, Map<int[][],Boolean> htLadders)

Method Summary

protected boolean	addBridge(AminoPolymer.Bridge bridge, Map<int[][],Boolean> htLadders)
private void	addLadder(Map<int[][],Boolean> htLadders)
private boolean	canAdd(AminoPolymer.Bridge bridge)
private void	extendLadder(int index1, int index2)
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

a

protected Atom a

b

protected Atom b

ladder

protected int[][] ladder

isAntiparallel

protected boolean isAntiparallel

Constructor Detail

AminoPolymer.Bridge

protected AminoPolymer.Bridge(Atom a,
                              Atom b,
                              Map<int[][],Boolean> htLadders)

Method Detail

addLadder

private void addLadder(Map<int[][],Boolean> htLadders)

toString

public String toString()

Overrides:

toString in class Object

addBridge

protected boolean addBridge(AminoPolymer.Bridge bridge,
                            Map<int[][],Boolean> htLadders)

canAdd

private boolean canAdd(AminoPolymer.Bridge bridge)

extendLadder

private void extendLadder(int index1,
                          int index2)