class IsoFxyReader extends AtomDataReader
| Modifier and Type | Field and Description |
|---|---|
private float[][] |
data |
private Object[] |
func |
private boolean |
isPlanarMapping |
private float[] |
values |
ac, atomData, atomIndex, atomNo, atomProp, atomRadius, atomXyzTruncated, bsMyIgnored, bsMySelected, bsNearby, bsSurfaceVoxels, contactPair, doAddHydrogens, doUseIterator, fileDotModel, fileName, firstNearbyAtom, haveOneProperty, havePlane, margin, maxDistance, maxRS, modelIndex, myAtomCount, myIndex, nearbyAtomCount, noFaceSpheres, pt0, pt1, ptV, ptY0, ptZ0, rs, rs2, sr, theProperty, thisAtomSet, thisPlane, thisX, validSpheres, vl0, vl1, vl2, voxelSourceallowMapData, dataType, maxGrid, point, precalculateVoxelData, ptsPerAngstrom, useOriginStepsPointsallowSigma, ANGSTROMS_PER_BOHR, anisotropy, center, cJvxlEdgeNaN, colorFractionBase, colorFractionRange, contourVertexCount, dataMax, dataMean, dataMin, defaultCutoff, defaultMappedDataMax, defaultMappedDataMin, eccentricityMatrix, eccentricityMatrixInverse, eccentricityRatio, eccentricityScale, edgeFractionBase, edgeFractionRange, fractionData, hasColorData, haveSurfaceAtoms, isAnisotropic, isEccentric, isJvxl, isPeriodic, isProgressive, isQuiet, isXLowToHigh, jvxlColorDataRead, jvxlCutoff, jvxlData, jvxlDataIs2dContour, jvxlDataIsColorDensity, jvxlDataIsColorMapped, jvxlDataIsPrecisionColor, jvxlEdgeDataRead, jvxlFileHeaderBuffer, jvxlNSurfaceInts, jvxlVoxelBitSet, marchingCubes, marchingSquares, meshData, meshDataServer, minMax, nBytes, nDataPoints, nPointsX, nPointsY, nPointsZ, params, ptTemp, qpc, sg, vertexDataOnly, volumeData, volumetricOrigin, volumetricVectors, voxelCounts, voxelData, xyzMax, xyzMin, yzCount, yzPlanes| Constructor and Description |
|---|
IsoFxyReader() |
| Modifier and Type | Method and Description |
|---|---|
protected float |
evaluateValue(int x,
int y,
int z) |
float[] |
getPlane(int x) |
protected float |
getValue(int x,
int y,
int z) |
float |
getValueAtPoint(javajs.util.T3 pt,
boolean getSource) |
(package private) void |
init(SurfaceGenerator sg)
implemented in SurfaceFileReader and
|
protected void |
initIFR(SurfaceGenerator sg) |
protected void |
readSurfaceData(boolean isMapData) |
private void |
setPlane(int x,
float[] plane) |
protected void |
setup(boolean isMapData) |
protected void |
setupType(String type) |
protected void |
setVolumeData() |
getAtomMinMax, getAtoms, initADR, markPlaneVoxels, markSphereVoxels, resetPlane, resetVoxelData, setGridLimitsForAtom, setHeader, setRadii, setRanges, setup2, setVertexSource, setVolumeDataADR, setVolumeForPlane, setVoxel, unsetVoxelData, unsetVoxelData2closeReader, generateCube, initVDR, readSurfaceDataVDR, readVolumeData, readVolumeParameters, readVoxelDataIndividually, setVolumeDataParams, setVoxelRange, showGridInfoaddTriangleCheck, addVC, addVertexCopy, applyColorScale, colorIsosurface, createIsosurface, discardTempData, discardTempDataSR, excludeMaximumSet, excludeMinimumSet, finalizeMapping, getColorPhaseIndex, getMinMaxMappedValues, getPlaneSR, getSPF, getSurfaceAtomIndex, getSurfacePointAndFraction, getSurfacePointIndexAndFraction, getValue, getValue2, gotoAndReadVoxelData, gotoData, initializeMapping, initializeVolumetricData, initPlanes, initSR, jvxlUpdateInfo, newVoxelDataCube, postProcessVertices, readAndSetVolumeParameters, readColorData, resetIsosurface, selectPocket, setBBox, setOutputChannel, setVectorAnisotropy, setVertexAnisotropy, setVolumeDataV, setVolumetricAnisotropy, setVolumetricOriginAnisotropy, slabIsosurface, updateSurfaceData, updateTrianglesprivate float[][] data
private boolean isPlanarMapping
private Object[] func
private final float[] values
void init(SurfaceGenerator sg)
SurfaceReaderinit in class VolumeDataReaderprotected void initIFR(SurfaceGenerator sg)
protected void setup(boolean isMapData)
setup in class AtomDataReaderprotected void setupType(String type)
protected void setVolumeData()
setVolumeData in class AtomDataReaderprotected void readSurfaceData(boolean isMapData)
throws Exception
readSurfaceData in class VolumeDataReaderExceptionpublic float[] getPlane(int x)
getPlane in interface VertexDataServergetPlane in class SurfaceReaderprivate void setPlane(int x,
float[] plane)
protected float getValue(int x,
int y,
int z)
public float getValueAtPoint(javajs.util.T3 pt,
boolean getSource)
getValueAtPoint in class SurfaceReadergetSource - TODOprotected float evaluateValue(int x,
int y,
int z)