JmolGenericPopup

java.lang.Object
- org.jmol.popup.GenericSwingPopup
- - org.jmol.popup.JmolGenericPopup

All Implemented Interfaces:

javajs.api.GenericMenuInterface

Direct Known Subclasses:

JmolAwtPopup, JmolJSPopup, JSModelKitPopup, ModelKitPopup
```
public abstract class JmolGenericPopup
extends GenericSwingPopup
```
A generic popup class that is then instantiated for a given platform and context as one of: org.jmol.popup.JmolPopup (via org.jmol.popup.SwingPopup) org.jmol.modelkit.ModelKitPopup (via org.jmol.popup.SwingPopup) org.jmol.awtjs2d.JSmolPopup (via org.jmol.awtjs2d.JSPopup) org.jmol.awtjs2d.JSModelKitPopup (via org.jmol.awtjs2d.JSPopup)

Field Summary

Fields
Modifier and Type	Field and Description
`private int`	`ac`
`private String`	`altlocs`
`private javajs.util.Lst<javajs.api.SC>`	`ChargesOnly`
`private javajs.util.Lst<String>`	`cnmrPeaks`
`private String`	`configurationSelected`
`private String`	`currentFrankId`
`private boolean`	`fileHasUnitCell`
`private javajs.util.Lst<javajs.api.SC>`	`FileMolOnly`
`private javajs.util.Lst<javajs.api.SC>`	`FileUnitOnly`
`private javajs.util.Lst<javajs.api.SC>`	`FramesOnly`
`private Object[][]`	`frankList`
`private javajs.api.SC`	`frankPopup`
`private int[]`	`group3Counts`
`private String`	`group3List`
`private boolean`	`hasSymmetry`
`private boolean`	`haveBFactors`
`private boolean`	`haveCharges`
`private javajs.util.Lst<String>`	`hnmrPeaks`
`private boolean`	`isLastFrame`
`private boolean`	`isMultiConfiguration`
`private boolean`	`isMultiFrame`
`private boolean`	`isPDB`
`private boolean`	`isUnitCell`
`private boolean`	`isVibration`
`private boolean`	`isZapped`
`private int`	`itemMax`
`private static int`	`MENUITEM_HEIGHT`
`protected Properties`	`menuText`
`private int`	`modelCount`
`private int`	`modelIndex`
`private Map<String,Object>`	`modelInfo`
`private String`	`modelSetFileName`
`private Map<String,Object>`	`modelSetInfo`
`private String`	`modelSetName`
`private String`	`modelSetRoot`
`private int`	`nFrankList`
`private javajs.util.Lst<javajs.api.SC>`	`NotPDB`
`private String[]`	`noZapped`
`private String`	`nullModelSetName`
`private javajs.util.Lst<javajs.api.SC>`	`PDBOnly`
`private javajs.util.Lst<javajs.api.SC>`	`SingleModelOnly`
`private javajs.util.Lst<javajs.api.SC>`	`Special`
`private javajs.util.Lst<javajs.api.SC>`	`SymmetryOnly`
`private javajs.util.Lst<javajs.api.SC>`	`TemperatureOnly`
`private int`	`titleWidthMax`
`private javajs.util.Lst<javajs.api.SC>`	`UnitcellOnly`
`private static int`	`UPDATE_ALL`
`private static int`	`UPDATE_CONFIG`
`protected static int`	`UPDATE_NEVER`
`private static int`	`UPDATE_SHOW`
`protected int`	`updateMode`
`private javajs.util.Lst<javajs.api.SC>`	`VibrationOnly`
`protected Viewer`	`vwr`

Fields inherited from class org.jmol.popup.GenericSwingPopup
allowSignedFeatures, buttonGroup, currentMenuItemId, helper, htCheckbox, htMenus, isApplet, isJS, isSigned, isTainted, isWebGL, menuName, popupMenu, strMenuStructure, thisPopup, thisx, thisy

Constructor Summary

Constructors
Constructor and Description

JmolGenericPopup()

Constructors
Constructor and Description
`JmolGenericPopup()`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`protected void`	`appCheckItem(String item, javajs.api.SC newMenu)`
`protected void`	`appCheckSpecialMenu(String item, javajs.api.SC subMenu, String word)`
`protected String`	`appFixLabel(String label)`
`protected String`	`appFixScript(String id, String script)`
`protected boolean`	`appGetBooleanProperty(String name)`
`protected String`	`appGetMenuAsString(String title)`
`protected boolean`	`appIsSpecialCheckBox(javajs.api.SC item, String basename, String what, boolean TF)`
`protected void`	`appRestorePopupMenu()`
`protected void`	`appRunScript(String script)`
`protected void`	`appUpdateForShow()`
`protected void`	`appUpdateSpecialCheckBoxValue(javajs.api.SC item, String what, boolean TF)` (1) setOption --> set setOption true or set setOption false
`private int`	`augmentGroup3List(javajs.api.SC menu, String type, boolean addSeparator)`
`private boolean`	`checkBoolean(String key)`
`private String`	`getMenuText(String key)`
`protected String`	`getSpecialLabel(String name, String text)` menus or menu items with SPECIAL in their name are sent here for on-the-fly labeling
`private void`	`getViewerData()`
`private String`	`gti(String s, int n)`
`private String`	`gto(String s, Object o)`
`protected void`	`initialize(Viewer vwr, PopupResource bundle, String title)`
`void`	`jpiDispose()`
`javajs.api.SC`	`jpiGetMenuAsObject()`
`void`	`jpiShow(int x, int y)`
`void`	`jpiUpdateComputedMenus()`
`private void`	`setFrankMenu(String id)`
`private boolean`	`setSecStrucMenu(javajs.api.SC menu, Map<String,Object> dssr)`
`private boolean`	`setSpectraMenu(javajs.api.SC menu, javajs.util.Lst<String> peaks)`
`private void`	`updateAboutSubmenu()`
`private void`	`updateConfigurationComputedMenu()`
`private void`	`updateElementsComputedMenu(BS elementsPresentBitSet)`
`private void`	`updateFileMenu()`
`private void`	`updateFileTypeDependentMenus()`
`private void`	`updateFRAMESbyModelComputedMenu()`
`private int`	`updateGroup3List(javajs.api.SC menu, String name)`
`private void`	`updateHeteroComputedMenu(Map<String,String> htHetero)`
`private void`	`updateLanguageSubmenu()`
`private void`	`updateModelSetComputedMenu()`
`private void`	`updatePDBComputedMenus()`
`private void`	`updateSceneComputedMenu()`
`private void`	`updateSelectMenu()`
`private void`	`updateSpecialMenuItem(javajs.api.SC m)`
`private void`	`updateSpectraMenu()`
`private void`	`updateSurfMoComputedMenu(Map<String,Object> moData)`
`private void`	`updateSYMMETRYComputedMenus()`
`private void`	`updateSYMMETRYSelectComputedMenu()`
`private void`	`updateSYMMETRYShowComputedMenu()`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface javajs.api.GenericMenuInterface
jpiInitialize, menuFocusCallback

Field Detail

UPDATE_NEVER
```
protected static final int UPDATE_NEVER
```
See Also:

Constant Field Values

UPDATE_ALL
```
private static final int UPDATE_ALL
```
See Also:

Constant Field Values

UPDATE_CONFIG
```
private static final int UPDATE_CONFIG
```
See Also:

Constant Field Values

UPDATE_SHOW
```
private static final int UPDATE_SHOW
```
See Also:

Constant Field Values

vwr
```
protected Viewer vwr
```

updateMode
```
protected int updateMode
```

menuText
```
protected Properties menuText
```

frankPopup
```
private javajs.api.SC frankPopup
```

nFrankList
```
private int nFrankList
```

itemMax
```
private int itemMax
```

titleWidthMax
```
private int titleWidthMax
```

nullModelSetName
```
private String nullModelSetName
```

modelSetName
```
private String modelSetName
```

modelSetFileName
```
private String modelSetFileName
```

modelSetRoot
```
private String modelSetRoot
```

currentFrankId
```
private String currentFrankId
```

configurationSelected
```
private String configurationSelected
```

altlocs
```
private String altlocs
```

frankList
```
private Object[][] frankList
```

modelSetInfo

private Map<String,Object> modelSetInfo

modelInfo
```
private Map<String,Object> modelInfo
```

NotPDB

private javajs.util.Lst<javajs.api.SC> NotPDB

PDBOnly

private javajs.util.Lst<javajs.api.SC> PDBOnly

FileUnitOnly

private javajs.util.Lst<javajs.api.SC> FileUnitOnly

FileMolOnly

private javajs.util.Lst<javajs.api.SC> FileMolOnly

UnitcellOnly

private javajs.util.Lst<javajs.api.SC> UnitcellOnly

SingleModelOnly

private javajs.util.Lst<javajs.api.SC> SingleModelOnly

FramesOnly

private javajs.util.Lst<javajs.api.SC> FramesOnly

VibrationOnly

private javajs.util.Lst<javajs.api.SC> VibrationOnly

Special

private javajs.util.Lst<javajs.api.SC> Special

SymmetryOnly

private javajs.util.Lst<javajs.api.SC> SymmetryOnly

ChargesOnly

private javajs.util.Lst<javajs.api.SC> ChargesOnly

TemperatureOnly

private javajs.util.Lst<javajs.api.SC> TemperatureOnly

fileHasUnitCell
```
private boolean fileHasUnitCell
```

haveBFactors
```
private boolean haveBFactors
```

haveCharges
```
private boolean haveCharges
```

isLastFrame
```
private boolean isLastFrame
```

isMultiConfiguration
```
private boolean isMultiConfiguration
```

isMultiFrame
```
private boolean isMultiFrame
```

isPDB
```
private boolean isPDB
```

hasSymmetry
```
private boolean hasSymmetry
```

isUnitCell
```
private boolean isUnitCell
```

isVibration
```
private boolean isVibration
```

isZapped
```
private boolean isZapped
```

modelIndex
```
private int modelIndex
```

modelCount
```
private int modelCount
```

ac
```
private int ac
```

group3List
```
private String group3List
```

group3Counts
```
private int[] group3Counts
```

cnmrPeaks

private javajs.util.Lst<String> cnmrPeaks

hnmrPeaks

private javajs.util.Lst<String> hnmrPeaks

MENUITEM_HEIGHT
```
private static final int MENUITEM_HEIGHT
```
See Also:

Constant Field Values

noZapped
```
private final String[] noZapped
```

Constructor Detail
- JmolGenericPopup
```
public JmolGenericPopup()
```

Method Detail

initialize

protected void initialize(Viewer vwr,
                          PopupResource bundle,
                          String title)

jpiDispose
```
public void jpiDispose()
```

jpiGetMenuAsObject

public javajs.api.SC jpiGetMenuAsObject()

jpiShow

public void jpiShow(int x,
                    int y)

jpiUpdateComputedMenus
```
public void jpiUpdateComputedMenus()
```

appCheckItem

protected void appCheckItem(String item,
                            javajs.api.SC newMenu)

Specified by:: appCheckItem in class GenericSwingPopup

appFixLabel
```
protected String appFixLabel(String label)
```
Specified by:

appFixLabel in class GenericSwingPopup

appFixScript

protected String appFixScript(String id,
                              String script)

Specified by:: appFixScript in class GenericSwingPopup

appGetBooleanProperty
```
protected boolean appGetBooleanProperty(String name)
```
Specified by:

appGetBooleanProperty in class GenericSwingPopup

appGetMenuAsString
```
protected String appGetMenuAsString(String title)
```
Specified by:

appGetMenuAsString in class GenericSwingPopup

appIsSpecialCheckBox

protected boolean appIsSpecialCheckBox(javajs.api.SC item,
                                       String basename,
                                       String what,
                                       boolean TF)

Specified by:: appIsSpecialCheckBox in class GenericSwingPopup

appRestorePopupMenu
```
protected void appRestorePopupMenu()
```
Specified by:

appRestorePopupMenu in class GenericSwingPopup

appRunScript
```
protected void appRunScript(String script)
```
Specified by:

appRunScript in class GenericSwingPopup

appUpdateSpecialCheckBoxValue

protected void appUpdateSpecialCheckBoxValue(javajs.api.SC item,
                                             String what,
                                             boolean TF)

(1) setOption --> set setOption true or set setOption false

Specified by:: appUpdateSpecialCheckBoxValue in class GenericSwingPopup
Parameters:: item -; what - option to set; TF - true or false

setFrankMenu
```
private void setFrankMenu(String id)
```

checkBoolean

private boolean checkBoolean(String key)

getViewerData
```
private void getViewerData()
```

appCheckSpecialMenu

protected void appCheckSpecialMenu(String item,
                                   javajs.api.SC subMenu,
                                   String word)

Specified by:: appCheckSpecialMenu in class GenericSwingPopup

appUpdateForShow
```
protected void appUpdateForShow()
```
Specified by:

appUpdateForShow in class GenericSwingPopup

updateFileMenu
```
private void updateFileMenu()
```

getMenuText

private String getMenuText(String key)

updateSelectMenu
```
private void updateSelectMenu()
```

updateElementsComputedMenu

private void updateElementsComputedMenu(BS elementsPresentBitSet)

updateSpectraMenu
```
private void updateSpectraMenu()
```

setSpectraMenu

private boolean setSpectraMenu(javajs.api.SC menu,
                               javajs.util.Lst<String> peaks)

updateHeteroComputedMenu

private void updateHeteroComputedMenu(Map<String,String> htHetero)

updateSurfMoComputedMenu

private void updateSurfMoComputedMenu(Map<String,Object> moData)

updateFileTypeDependentMenus

private void updateFileTypeDependentMenus()

updateSceneComputedMenu

private void updateSceneComputedMenu()

updatePDBComputedMenus
```
private void updatePDBComputedMenus()
```

setSecStrucMenu

private boolean setSecStrucMenu(javajs.api.SC menu,
                                Map<String,Object> dssr)

updateGroup3List

private int updateGroup3List(javajs.api.SC menu,
                             String name)

augmentGroup3List

private int augmentGroup3List(javajs.api.SC menu,
                              String type,
                              boolean addSeparator)

updateSYMMETRYComputedMenus

private void updateSYMMETRYComputedMenus()

updateSYMMETRYShowComputedMenu

private void updateSYMMETRYShowComputedMenu()

updateSYMMETRYSelectComputedMenu

private void updateSYMMETRYSelectComputedMenu()

updateFRAMESbyModelComputedMenu

private void updateFRAMESbyModelComputedMenu()

updateConfigurationComputedMenu

private void updateConfigurationComputedMenu()

updateModelSetComputedMenu

private void updateModelSetComputedMenu()

gti

private String gti(String s,
                   int n)

gto

private String gto(String s,
                   Object o)

updateAboutSubmenu
```
private void updateAboutSubmenu()
```

updateLanguageSubmenu
```
private void updateLanguageSubmenu()
```

updateSpecialMenuItem

private void updateSpecialMenuItem(javajs.api.SC m)

getSpecialLabel
```
protected String getSpecialLabel(String name,
                                 String text)
```
menus or menu items with SPECIAL in their name are sent here for on-the-fly labeling

Parameters:

name -

text -

Returns:

revised text

Class JmolGenericPopup

Field Summary

Fields inherited from class org.jmol.popup.GenericSwingPopup

Constructor Summary

Method Summary

Methods inherited from class org.jmol.popup.GenericSwingPopup

Methods inherited from class java.lang.Object

Methods inherited from interface javajs.api.GenericMenuInterface

Field Detail

UPDATE_NEVER

UPDATE_ALL

UPDATE_CONFIG

UPDATE_SHOW

vwr

updateMode

menuText

frankPopup

nFrankList

itemMax

titleWidthMax

nullModelSetName

modelSetName

modelSetFileName

modelSetRoot

currentFrankId

configurationSelected

altlocs

frankList

modelSetInfo

modelInfo

NotPDB

PDBOnly

FileUnitOnly

FileMolOnly

UnitcellOnly

SingleModelOnly

FramesOnly

VibrationOnly

Special

SymmetryOnly

ChargesOnly

TemperatureOnly

fileHasUnitCell

haveBFactors

haveCharges

isLastFrame

isMultiConfiguration

isMultiFrame

isPDB

hasSymmetry

isUnitCell

isVibration

isZapped

modelIndex

modelCount

ac

group3List

group3Counts

cnmrPeaks

hnmrPeaks

MENUITEM_HEIGHT

noZapped

Constructor Detail

JmolGenericPopup

Method Detail

initialize

jpiDispose

jpiGetMenuAsObject

jpiShow

jpiUpdateComputedMenus

appCheckItem

appFixLabel

appFixScript

appGetBooleanProperty

appGetMenuAsString

appIsSpecialCheckBox

appRestorePopupMenu

appRunScript

appUpdateSpecialCheckBoxValue

setFrankMenu