OpenSwathWorkflow.cpp File Reference

#include <OpenMS/ANALYSIS/OPENSWATH/OPENSWATHALGO/DATAACCESS/ISpectrumAccess.h>
#include <OpenMS/ANALYSIS/OPENSWATH/OPENSWATHALGO/DATAACCESS/DataStructures.h>
#include <OpenMS/ANALYSIS/OPENSWATH/OPENSWATHALGO/DATAACCESS/TransitionExperiment.h>
#include <OpenMS/INTERFACES/IMSDataConsumer.h>
#include <OpenMS/FORMAT/DATAACCESS/MSDataCachedConsumer.h>
#include <OpenMS/FORMAT/DATAACCESS/MSDataTransformingConsumer.h>
#include <OpenMS/FORMAT/DATAACCESS/MSDataWritingConsumer.h>
#include <OpenMS/FORMAT/FileHandler.h>
#include <OpenMS/FORMAT/FileTypes.h>
#include <OpenMS/FORMAT/TraMLFile.h>
#include <OpenMS/FORMAT/MzMLFile.h>
#include <OpenMS/FORMAT/FeatureXMLFile.h>
#include <OpenMS/FORMAT/TransformationXMLFile.h>
#include <OpenMS/ANALYSIS/OPENSWATH/TransitionTSVReader.h>
#include <OpenMS/FORMAT/CachedMzML.h>
#include <OpenMS/FORMAT/SwathFile.h>
#include <OpenMS/ANALYSIS/OPENSWATH/SwathWindowLoader.h>
#include <OpenMS/KERNEL/MSExperiment.h>
#include <OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessOpenMS.h>
#include <OpenMS/ANALYSIS/OPENSWATH/OpenSwathHelper.h>
#include <OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/DataAccessHelper.h>
#include <OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/SimpleOpenMSSpectraAccessFactory.h>
#include <OpenMS/ANALYSIS/OPENSWATH/MRMRTNormalizer.h>
#include <OpenMS/ANALYSIS/OPENSWATH/ChromatogramExtractor.h>
#include <OpenMS/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.h>
#include <OpenMS/ANALYSIS/OPENSWATH/MRMTransitionGroupPicker.h>
#include <assert.h>
#include <OpenMS/APPLICATIONS/TOPPBase.h>
#include <OpenMS/CONCEPT/ProgressLogger.h>

Classes
class	OpenSwathTSVWriter
	Class to write out an OpenSwath TSV output (mProphet input) More...
class	OpenSwathWorkflow
	Class to execute an OpenSwath Workflow. More...
struct	OpenSwathWorkflow::ChromExtractParams
	ChromatogramExtractor parameters. More...

Namespaces
	OpenMS
	Main OpenMS namespace.