PeptideIndexer.cpp File Reference

#include <OpenMS/APPLICATIONS/TOPPBase.h>
#include <OpenMS/CHEMISTRY/EnzymaticDigestion.h>
#include <OpenMS/DATASTRUCTURES/SeqanIncludeWrapper.h>
#include <OpenMS/FORMAT/IdXMLFile.h>
#include <OpenMS/FORMAT/FASTAFile.h>
#include <OpenMS/METADATA/ProteinIdentification.h>
#include <OpenMS/SYSTEM/File.h>
#include <OpenMS/FORMAT/FileHandler.h>
#include <OpenMS/SYSTEM/StopWatch.h>
#include <OpenMS/METADATA/PeptideEvidence.h>
#include <algorithm>

Classes
struct	PeptideProteinMatchInformation
struct	FoundProteinFunctor
struct	SAValue< Index< StringSet< Peptide >, IndexWotd<> > >
struct	EquivalenceClassAA_< T >

Namespaces
	seqan

Functions
template<bool enumerateA, bool enumerateB, typename TOnFoundFunctor , typename TTreeIteratorA , typename TIterPosA , typename TTreeIteratorB , typename TIterPosB , typename TErrors >
void	_approximateAminoAcidTreeSearch (TOnFoundFunctor &onFoundFunctor, TTreeIteratorA iterA, TIterPosA iterPosA, TTreeIteratorB iterB_, TIterPosB iterPosB, TErrors errorsLeft, TErrors classErrorsLeft)
template<typename TEquivalenceTable >
bool	_charComparator (AminoAcid charA, AminoAcid charB, TEquivalenceTable equivalence)