FeatureLinkerUnlabeledQT

Groups corresponding features from multiple maps using a QT clustering approach.

potential predecessor tools	$\longrightarrow$ FeatureLinkerUnlabeledQT $\longrightarrow$	potential successor tools
FeatureFinderCentroided (or another feature detection algorithm)		ProteinQuantifier
MapAlignerPoseClustering (or another map alignment algorithm)		TextExporter
		SeedListGenerator

Reference:
Weisser et al.: An automated pipeline for high-throughput label-free quantitative proteomics (J. Proteome Res., 2013, PMID: 23391308).

This tool provides an algorithm for grouping corresponding features in multiple runs of label-free experiments. For more details and algorithm-specific parameters (set in the ini file) see "Detailed Description" in the algorithm documentation.

FeatureLinkerUnlabeledQT takes several feature maps (featureXML files) and stores the corresponding features in a consensus map (consensusXML file). Feature maps can be created from MS experiments (peak data) using one of the FeatureFinder TOPP tools.

See also: FeatureLinkerUnlabeled FeatureLinkerLabeled

The command line parameters of this tool are:

INI file documentation of this tool: