| filterIdentificationsByBestHits(const PeptideIdentification &identification, PeptideIdentification &filtered_identification, bool strict=false) | IDFilter | static |
| filterIdentificationsByBestNHits(const IdentificationType &identification, Size n, IdentificationType &filtered_identification) | IDFilter | inlinestatic |
| filterIdentificationsByBestNHits(MSExperiment< PeakT > &experiment, Size n) | IDFilter | inlinestatic |
| filterIdentificationsByBestNToMHits(const IdentificationType &identification, Size n, Size m, IdentificationType &filtered_identification) | IDFilter | inlinestatic |
| filterIdentificationsByCharge(const PeptideIdentification &identification, Int charge, PeptideIdentification &filtered_identification) | IDFilter | static |
| filterIdentificationsByDecoy(const IdentificationType &identification, IdentificationType &filtered_identification) | IDFilter | inlinestatic |
| filterIdentificationsByExclusionPeptides(const PeptideIdentification &identification, const std::set< String > &peptides, bool ignore_modifications, PeptideIdentification &filtered_identification) | IDFilter | static |
| filterIdentificationsByLength(const PeptideIdentification &identification, PeptideIdentification &filtered_identification, Size min_length, Size max_length=UINT_MAX) | IDFilter | static |
| filterIdentificationsByMetaValueRange(const PeptideIdentification &identification, const String &key, double low, double high, bool missing=false) | IDFilter | static |
| filterIdentificationsByMZ(const std::vector< PeptideIdentification > &identifications, double min_mz, double max_mz, std::vector< PeptideIdentification > &filtered_identifications) | IDFilter | static |
| filterIdentificationsByMzError(const PeptideIdentification &identification, double mass_error, bool unit_ppm, PeptideIdentification &filtered_identification) | IDFilter | static |
| filterIdentificationsByProteins(const PeptideIdentification &identification, const std::vector< FASTAFile::FASTAEntry > &proteins, PeptideIdentification &filtered_identification, bool no_protein_identifiers=false) | IDFilter | static |
| filterIdentificationsByProteins(const ProteinIdentification &identification, const std::vector< FASTAFile::FASTAEntry > &proteins, ProteinIdentification &filtered_identification) | IDFilter | static |
| filterIdentificationsByProteins(MSExperiment< PeakT > &experiment, const std::vector< FASTAFile::FASTAEntry > &proteins) | IDFilter | inlinestatic |
| filterIdentificationsByRT(const std::vector< PeptideIdentification > &identifications, double min_rt, double max_rt, std::vector< PeptideIdentification > &filtered_identifications) | IDFilter | static |
| filterIdentificationsByRTFirstDimPValues(const PeptideIdentification &identification, PeptideIdentification &filtered_identification, double p_value=0.05) | IDFilter | static |
| filterIdentificationsByRTPValues(const PeptideIdentification &identification, PeptideIdentification &filtered_identification, double p_value=0.05) | IDFilter | static |
| filterIdentificationsByScore(const IdentificationType &identification, double threshold_score, IdentificationType &filtered_identification) | IDFilter | inlinestatic |
| filterIdentificationsByScores(MSExperiment< PeakT > &experiment, double peptide_threshold_score, double protein_threshold_score) | IDFilter | inlinestatic |
| filterIdentificationsByThreshold(const IdentificationType &identification, double threshold_fraction, IdentificationType &filtered_identification) | IDFilter | inlinestatic |
| filterIdentificationsByThresholds(MSExperiment< PeakT > &experiment, double peptide_threshold_fraction, double protein_threshold_fraction) | IDFilter | inlinestatic |
| filterIdentificationsByVariableModifications(const PeptideIdentification &identification, const std::vector< String > &fixed_modifications, PeptideIdentification &filtered_identification) | IDFilter | static |
| filterIdentificationsUnique(const PeptideIdentification &identification, PeptideIdentification &filtered_identification) | IDFilter | static |
| getBestHit(const std::vector< IdentificationType > identifications, bool assume_sorted, PeptideHit &best_hit) | IDFilter | inlinestatic |
| IDFilter() | IDFilter | |
| removeUnreferencedPeptideHits(const ProteinIdentification &identification, std::vector< PeptideIdentification > &peptide_identifications, bool delete_unreferenced_peptide_hits=false) | IDFilter | static |
| removeUnreferencedProteinHits(const ProteinIdentification &identification, const std::vector< PeptideIdentification > &peptide_identifications, ProteinIdentification &filtered_identification) | IDFilter | static |
| updateProteinGroups(const std::vector< ProteinIdentification::ProteinGroup > &groups, const std::vector< ProteinHit > &hits, std::vector< ProteinIdentification::ProteinGroup > &filtered_groups) | IDFilter | static |
| ~IDFilter() | IDFilter | virtual |