LCElutionPeak Class Reference

#include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/LCElutionPeak.h>

Public Member Functions
	~LCElutionPeak ()
	LCElutionPeak ()
	LCElutionPeak (MZ_series_ITERATOR, double)
	LCElutionPeak (const LCElutionPeak &)
	LCElutionPeak (const LCElutionPeak *)
void	analyzeLCElutionPeak ()
void	setSNIntensityThreshold ()
void	computeLCElutionPeakParameters ()
double	compute_delta_area (double, double, double, double)
void	remove_background_peak ()
void	compute_CHRG ()
void	defineLCElutionPeakParametersFromMSPeak ()
void	createConsensIsotopPattern ()
void	print_profile (std::ofstream *)
MSPeak *	find_true_peak (float)
void	show_info ()
LCElutionPeak &	operator= (const LCElutionPeak &)
LCElutionPeak &	operator<= (const LCElutionPeak &)
LCElutionPeak &	operator>= (const LCElutionPeak &)
LCElutionPeak &	operator< (const LCElutionPeak &)
LCElutionPeak &	operator> (const LCElutionPeak &)
void	setElutionPeakExtraInfo (std::string in)
std::string	getElutionPeakExtraInfo ()
SIGNAL_iterator	get_signal_list_start ()
SIGNAL_iterator	get_signal_list_end ()
void	set_apex_retention_time (double in)
void	update_CHRGMAP (MSPeak *in)
int	get_scan_apex ()
double	get_apex_intensity ()
double	get_apex_retention_time ()
double	get_apex_MZ ()
float	get_intensity (int in)
double	get_MZ (int)
double	get_total_peak_area ()
int	get_start_scan ()
int	get_end_scan ()
void	set_start_retention_time (double in)
double	get_start_retention_time ()
void	set_end_retention_time (double in)
double	get_end_retention_time ()
int	get_nb_ms_peaks ()
int	get_charge_state ()
double	getSignalToNoise ()
double	getSignalToNoiseBackground ()

Static Public Attributes
static double	DEBUG_MASS_START
static double	DEBUG_MASS_END

Protected Attributes
double	fMonoMass
double	fVolume
int	fCharge
int	fScanNumberStart
int	fScanNumberApex
int	fScanNumberEnd
double	fapex_intensity
double	fRT
double	fStartTR
double	fEndTR
double	fpeak_area
double	fSignalToNoise
double	fSNIntensityThreshold
MSPeak *	APEX
std::string	elutionPeakExtraInfo
std::multimap< int, MSPeak >	intens_signals
std::multimap< int, int >	CHRG_MAP

Private Attributes
ConsensusIsotopePattern *	isotopePattern
int	fNrIsotopes
double	f_observed_Mass
double	fIsotopMass

Constructor & Destructor Documentation

~LCElutionPeak

(

)

LCElutionPeak

(

)

LCElutionPeak	(	MZ_series_ITERATOR	,
		double
	)

LCElutionPeak

(

const LCElutionPeak &

)

LCElutionPeak

(

const LCElutionPeak *

)

Member Function Documentation

void analyzeLCElutionPeak

(

)

void compute_CHRG

(

)

double compute_delta_area	(	double	,
		double	,
		double	,
		double
	)

void computeLCElutionPeakParameters

(

)

void createConsensIsotopPattern

(

)

void defineLCElutionPeakParametersFromMSPeak

(

)

MSPeak* find_true_peak

(

float

)

double get_apex_intensity

(

)

double get_apex_MZ

(

)

double get_apex_retention_time

(

)

int get_charge_state

(

)

double get_end_retention_time

(

)

int get_end_scan

(

)

float get_intensity

(

int

in

)

double get_MZ

(

int

)

int get_nb_ms_peaks

(

)

int get_scan_apex

(

)

SIGNAL_iterator get_signal_list_end

(

)

SIGNAL_iterator get_signal_list_start

(

)

double get_start_retention_time

(

)

int get_start_scan

(

)

double get_total_peak_area

(

)

std::string getElutionPeakExtraInfo

(

)

double getSignalToNoise

(

)

double getSignalToNoiseBackground

(

)

LCElutionPeak& operator<

(

const LCElutionPeak &

)

LCElutionPeak& operator<=

(

const LCElutionPeak &

)

LCElutionPeak& operator=

(

const LCElutionPeak &

)

LCElutionPeak& operator>

(

const LCElutionPeak &

)

LCElutionPeak& operator>=

(

const LCElutionPeak &

)

void print_profile

(

std::ofstream *

)

void remove_background_peak

(

)

void set_apex_retention_time

(

double

in

)

void set_end_retention_time

(

double

in

)

void set_start_retention_time

(

double

in

)

void setElutionPeakExtraInfo

(

std::string

in

)

void setSNIntensityThreshold

(

)

void show_info

(

)

void update_CHRGMAP

(

MSPeak *

in

)

Member Data Documentation

MSPeak* APEX

protected

std::multimap<int, int> CHRG_MAP

protected

double DEBUG_MASS_END

static

double DEBUG_MASS_START

static

std::string elutionPeakExtraInfo

protected

double f_observed_Mass

private

double fapex_intensity

protected

int fCharge

protected

double fEndTR

protected

double fIsotopMass

private

double fMonoMass

protected

int fNrIsotopes

private

double fpeak_area

protected

double fRT

protected

int fScanNumberApex

protected

int fScanNumberEnd

protected

int fScanNumberStart

protected

double fSignalToNoise

protected

double fSNIntensityThreshold

protected

double fStartTR

protected

double fVolume

protected

std::multimap<int, MSPeak> intens_signals

protected

ConsensusIsotopePattern* isotopePattern

private