Simulates tandem MS signals for a given set of peptides. More...
#include <OpenMS/SIMULATION/RawTandemMSSignalSimulation.h>
Inheritance diagram for RawTandemMSSignalSimulation:
Public Member Functions | |
| RawTandemMSSignalSimulation & | operator= (const RawTandemMSSignalSimulation &source) |
| void | generateRawTandemSignals (const SimTypes::FeatureMapSim &, SimTypes::MSSimExperiment &, SimTypes::MSSimExperiment &) |
Constructors and Destructors | |
| RawTandemMSSignalSimulation () | |
| Default constructor (hidden) More... | |
| RawTandemMSSignalSimulation (SimTypes::MutableSimRandomNumberGeneratorPtr rng) | |
| Constructor taking a random generator. More... | |
| RawTandemMSSignalSimulation (const RawTandemMSSignalSimulation &source) | |
| Copy constructor. More... | |
| virtual | ~RawTandemMSSignalSimulation () |
| Destructor. More... | |
 Public Member Functions inherited from DefaultParamHandler | |
| DefaultParamHandler (const String &name) | |
| Constructor with name that is displayed in error messages. More... | |
| DefaultParamHandler (const DefaultParamHandler &rhs) | |
| Copy constructor. More... | |
| virtual | ~DefaultParamHandler () |
| Destructor. More... | |
| virtual DefaultParamHandler & | operator= (const DefaultParamHandler &rhs) |
| Assignment operator. More... | |
| virtual bool | operator== (const DefaultParamHandler &rhs) const |
| Equality operator. More... | |
| void | setParameters (const Param ¶m) |
| Sets the parameters. More... | |
| const Param & | getParameters () const |
| Non-mutable access to the parameters. More... | |
| const Param & | getDefaults () const |
| Non-mutable access to the default parameters. More... | |
| const String & | getName () const |
| Non-mutable access to the name. More... | |
| void | setName (const String &name) |
| Mutable access to the name. More... | |
| const std::vector< String > & | getSubsections () const |
| Non-mutable access to the registered subsections. More... | |
Protected Member Functions | |
| void | generateMSESpectra_ (const SimTypes::FeatureMapSim &features, const SimTypes::MSSimExperiment &experiment, SimTypes::MSSimExperiment &ms2) |
| void | generatePrecursorSpectra_ (const SimTypes::FeatureMapSim &features, const SimTypes::MSSimExperiment &experiment, SimTypes::MSSimExperiment &ms2) |
| Protected Member Functions inherited from DefaultParamHandler | |
| virtual void | updateMembers_ () |
| This method is used to update extra member variables at the end of the setParameters() method. More... | |
| void | defaultsToParam_ () |
| Updates the parameters after the defaults have been set in the constructor. More... | |
Protected Attributes | |
| SimTypes::MutableSimRandomNumberGeneratorPtr | rnd_gen_ |
| Random number generator. More... | |
| Protected Attributes inherited from DefaultParamHandler | |
| Param | param_ |
| Container for current parameters. More... | |
| Param | defaults_ |
| Container for default parameters. This member should be filled in the constructor of derived classes! More... | |
| std::vector< String > | subsections_ |
| Container for registered subsections. This member should be filled in the constructor of derived classes! More... | |
| String | error_name_ |
| Name that is displayed in error messages during the parameter checking. More... | |
| bool | check_defaults_ |
| If this member is set to false no checking if parameters in done;. More... | |
| bool | warn_empty_defaults_ |
| If this member is set to false no warning is emitted when defaults are empty;. More... | |
Detailed Description
Simulates tandem MS signals for a given set of peptides.
Simulates tandem MS signals for a given set of peptides, with charge annotation, given detectabilities, predicted retention times and charge values.
Constructor & Destructor Documentation
Default constructor (hidden)
Constructor taking a random generator.
| RawTandemMSSignalSimulation | ( | const RawTandemMSSignalSimulation & | source | ) |
Copy constructor.
|
virtual |
Destructor.
Member Function Documentation
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protected |
|
protected |
| void generateRawTandemSignals | ( | const SimTypes::FeatureMapSim & | , |
| SimTypes::MSSimExperiment & | , | ||
| SimTypes::MSSimExperiment & | |||
| ) |
| RawTandemMSSignalSimulation& operator= | ( | const RawTandemMSSignalSimulation & | source | ) |
Member Data Documentation
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protected |
Random number generator.