| MapAlignerBase | Base class for different MapAligner TOPP tools |
| FeatureFinderIdentification | Detects features in MS1 data based on peptide identifications |
| FeatureLinkerBase | Base class for different FeatureLinker tools |
| OpenSwathAssayGenerator | Generates filtered and optimized assays using TraML files |
| PILISIdentification | Performs an ProteinIdentification with PILIS |
| PILISModelCV | Perform a cross validation of the PILIS model parameters |
| PILISModelTrainer | Train the PILIS model with a given set of spectra and identifications |
| PILISSpectraGenerator | Generate spectra given a list of peptides and a PILIS model |
| MetaboliteSpectralMatcher | MetaboliteSpectralMatcher assembles metabolite features from singleton mass traces |
| MRMTransitionGroupPicker | Picks peaks in MRM chromatograms |
| PeakPickerIterative | A tool for peak detection in profile data. Executes the peak picking with high_res algorithm. |
| RTAnnotator | Adds RT information to identifications in mzid |
| TopPerc | TopPerc facilitates the input to, the call of and output integration of Percolator. Percolator (http://per-colator.com/) is a tool to apply semi-supervised learning for peptide identification from shotgun proteomics datasets |
| Experimental List | |
| Improvements List | |
| Todo List | |
| Deprecated List | |
| Bug List |
| OpenMS / TOPP release 2.0.0 | Documentation generated on Wed Mar 30 2016 12:49:42 using doxygen 1.8.11 |