LightTargetedExperiment Struct Reference

#include <OpenMS/ANALYSIS/OPENSWATH/OPENSWATHALGO/DATAACCESS/TransitionExperiment.h>

Public Types
typedef LightTransition	Transition
typedef LightPeptide	Peptide
typedef LightProtein	Protein

Public Member Functions
	LightTargetedExperiment ()
std::vector< LightTransition > &	getTransitions ()
std::vector< LightPeptide > &	getPeptides ()
std::vector< LightProtein > &	getProteins ()
const LightPeptide &	getPeptideByRef (const std::string &ref)

Public Attributes
std::vector< LightTransition >	transitions
std::vector< LightPeptide >	peptides
std::vector< LightProtein >	proteins

Private Member Functions
void	createPeptideReferenceMap_ ()

Private Attributes
bool	peptide_reference_map_dirty_
std::map< std::string, LightPeptide * >	peptide_reference_map_

Member Typedef Documentation

typedef LightPeptide Peptide

typedef LightProtein Protein

typedef LightTransition Transition

Constructor & Destructor Documentation

LightTargetedExperiment ( )

inline

Member Function Documentation

void createPeptideReferenceMap_ ( )

inlineprivate

const LightPeptide& getPeptideByRef ( const std::string &  ref )

inline

std::vector<LightPeptide>& getPeptides ( )

inline

Referenced by OpenSwathWorkflow::performExtraction(), OpenSwathWorkflow::prepare_coordinates(), OpenSwathWorkflow::RTNormalization(), and OpenSwathWorkflow::scoreAllChromatograms().

std::vector<LightProtein>& getProteins ( )

inline

std::vector<LightTransition>& getTransitions ( )

inline

Referenced by OpenSwathWorkflow::performExtraction(), OpenSwathWorkflow::prepare_coordinates(), and OpenSwathWorkflow::scoreAllChromatograms().

Member Data Documentation

std::map<std::string, LightPeptide*> peptide_reference_map_

private

bool peptide_reference_map_dirty_

private

std::vector<LightPeptide> peptides

Referenced by OpenSwathWorkflow::selectPeptidesForBatch_().

std::vector<LightProtein> proteins

Referenced by OpenSwathWorkflow::selectPeptidesForBatch_().

std::vector<LightTransition> transitions

Referenced by OpenSwathWorkflow::performExtraction(), and OpenSwathWorkflow::selectPeptidesForBatch_().