LightTransition Struct Reference

#include <OpenMS/ANALYSIS/OPENSWATH/OPENSWATHALGO/DATAACCESS/TransitionExperiment.h>

Public Member Functions
int	getProductChargeState () const
std::string	getNativeID () const
std::string	getPeptideRef () const
double	getLibraryIntensity () const
void	setLibraryIntensity (double l)
double	getProductMZ () const
double	getPrecursorMZ () const
void	setDetectingTransition (bool d)
bool	isDetectingTransition () const
void	setQuantifyingTransition (bool q)
bool	isQuantifyingTransition () const
void	setIdentifyingTransition (bool i)
bool	isIdentifyingTransition () const
void	setSiteIdentifyingTransition (std::vector< int > i)
std::vector< int >	getSiteIdentifyingTransition () const
void	setSiteIdentifyingClass (std::vector< std::string > i)
std::vector< std::string >	getSiteIdentifyingClass () const

Public Attributes
std::string	transition_name
std::string	peptide_ref
double	library_intensity
double	product_mz
double	precursor_mz
int	charge
bool	decoy
bool	detecting_transition
bool	quantifying_transition
bool	identifying_transition
std::vector< int >	site_identifying_transition
std::vector< std::string >	site_identifying_class

Member Function Documentation

double getLibraryIntensity ( ) const

inline

std::string getNativeID ( ) const

inline

Referenced by OpenSwathWorkflow::prepare_coordinates().

std::string getPeptideRef ( ) const

inline

Referenced by OpenSwathWorkflow::prepare_coordinates().

double getPrecursorMZ ( ) const

inline

Referenced by OpenSwathWorkflow::prepare_coordinates().

int getProductChargeState ( ) const

inline

double getProductMZ ( ) const

inline

Referenced by OpenSwathWorkflow::prepare_coordinates().

std::vector<std::string> getSiteIdentifyingClass ( ) const

inline

std::vector<int> getSiteIdentifyingTransition ( ) const

inline

bool isDetectingTransition ( ) const

inline

bool isIdentifyingTransition ( ) const

inline

bool isQuantifyingTransition ( ) const

inline

void setDetectingTransition ( bool  d )

inline

void setIdentifyingTransition ( bool  i )

inline

void setLibraryIntensity ( double  l )

inline

void setQuantifyingTransition ( bool  q )

inline

void setSiteIdentifyingClass ( std::vector< std::string >  i )

inline

void setSiteIdentifyingTransition ( std::vector< int >  i )

inline

Member Data Documentation

int charge

bool decoy

Referenced by OpenSwathTSVWriter::prepareLine().

bool detecting_transition

bool identifying_transition

double library_intensity

std::string peptide_ref

double precursor_mz

Referenced by OpenSwathTSVWriter::prepareLine().

double product_mz

bool quantifying_transition

std::vector<std::string> site_identifying_class

std::vector<int> site_identifying_transition

std::string transition_name