| Package | Description |
|---|---|
| picard.illumina | |
| picard.util | |
| picard.vcf |
| Class and Description |
|---|
| IlluminaUtil.IlluminaAdapterPair
Describes adapters used on each pair of strands
|
| Class and Description |
|---|
| AbstractInputParser
Class for parsing text files where each line consists of fields separated by whitespace.
|
| AdapterMarker
Store one or more AdapterPairs to use to mark adapter sequence of SAMRecords.
|
| AdapterPair |
| AtomicIterator
Describes
|
| BaitDesigner.DesignStrategy
Set of possible design strategies for bait design.
|
| BasicInputParser
TextFileParser which reads a single text file.
|
| DbSnpBitSetUtil
Utility class to use with DbSnp files to determine is a locus is
a dbSnp site.
|
| DbSnpBitSetUtil.DbSnpBitSets
Little tuple class to contain one bitset for SNPs and another for Indels.
|
| DelimitedTextFileWithHeaderIterator.Row |
| IlluminaUtil.IlluminaAdapterPair
Describes adapters used on each pair of strands
|
| IntervalListScatterer.Mode |
| IntervalListTools.Action |
| MathUtil.LogMath
A collection of common math operations that work with log values.
|
| QuerySortedReadPairIteratorUtil.ReadPair |
| TabbedInputParser
Parser for tab-delimited files
|
| TabbedTextFileWithHeaderParser.Row |
| TestNGUtil.TestNGParameterizable
Interface for exposing an implementation for converting an object into a Object[] appropriate for positional
parameter-passing as performed by TestNG.
|
| VariantType
Enum to hold the possible types of dbSnps.
|
| Class and Description |
|---|
| DbSnpBitSetUtil.DbSnpBitSets
Little tuple class to contain one bitset for SNPs and another for Indels.
|