picard.vcf

Class ByIntervalListVariantContextIterator

java.lang.Object

picard.vcf.ByIntervalListVariantContextIterator

All Implemented Interfaces:

Iterator<VariantContext>

public class ByIntervalListVariantContextIterator
extends Object
implements Iterator<VariantContext>

Takes a VCFFileReader and an IntervalList and provides a single iterator over all variants in all the intervals.

Author:

Tim Fennell, George Grant

Constructor Summary

Constructors

Constructor and Description
ByIntervalListVariantContextIterator(VCFFileReader reader, IntervalList intervals)

Method Summary

Modifier and Type	Method and Description
boolean	hasNext()
VariantContext	next()
void	remove()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.Iterator

forEachRemaining

Constructor Detail

ByIntervalListVariantContextIterator

public ByIntervalListVariantContextIterator(VCFFileReader reader,
                                            IntervalList intervals)

Method Detail

hasNext

public boolean hasNext()

Specified by:

hasNext in interface Iterator<VariantContext>

next

public VariantContext next()

Specified by:

next in interface Iterator<VariantContext>

remove

public void remove()

Specified by:

remove in interface Iterator<VariantContext>