| Package | Description |
|---|---|
| picard.vcf | |
| picard.vcf.processor |
| Class and Description |
|---|
| VariantProcessor.Accumulator
Handles
VariantContexts, and accumulates their data in some fashion internally. |
| Class and Description |
|---|
| VariantAccumulatorExecutor
Describes the functionality for an executor that manages the delegation of work to
VariantProcessor.Accumulators. |
| VariantIteratorProducer
A mechanism for iterating over
CloseableIterator of VariantContexts in in some fashion, given VCF files and optionally
an interval list. |
| VariantProcessor
Describes an object that processes variants and produces a result.
|
| VariantProcessor.Accumulator
Handles
VariantContexts, and accumulates their data in some fashion internally. |
| VariantProcessor.AccumulatorGenerator
Generates instances of
VariantProcessor.Accumulators. |
| VariantProcessor.Builder
Simple builder of
VariantProcessors. |
| VariantProcessor.ResultMerger
Takes a collection of results produced by
VariantProcessor.Accumulator.result() and merges them into a single RESULT. |
| VcfFileSegment
Describes a segment of a particular VCF file.
|
| VcfFileSegmentGenerator
Describes a mechanism for producing
VcfFileSegments from a VCF file. |